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Not sure what you mean. Could you provide an example?

Oh nevermind I got it now. Its that white-space replacer. And I think I found a bug.

When you have a new instance of the program, if you turn off white-spaces then close the window (returning to the old instance) the setting you made to turn ...

I dont get it...

When I compare a file its adding all these ...'s and >> that arnt origonaly in the file :S. How do I get rid of them?