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Looking at the command line options there appears to be no way to synchronize or move files through command line. Is there the ability, or is it out of the question, I am looking to automate some procedures, and it would be helpful instead of having to move a whole directory and all of its children if I don't have too, I would rather just have the script move the files needed.

No such ability. EDP is first and foremost a visual diff tool, and its command line is normally just a way to either start the program in a certain way, or to output diffs in a certain format and exit.

Thanks for the reply, I have figured out a way around my problem with out haveing to perfrom a full copy of directories.